H3K4 di and tri methylation provide an epigenetic signature of active enhancers
 Aleksandra Pekowska*, Touati Benoukraf*, Joaquin Zacarias-Cabeza, Frederic Koch, Hélène Holota, Jean Imbert, Jean-Christophe Andrau,Pierre Ferrier and Salvatore Spicuglia - * Join first Authors
Agilent ChIP-Chip, Affymetrix expression & AB Solid ChIP-Seq data.

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Links ::.

Agilent ChIP-Chip Data::.


Source Name Characteristics[Organism] Derived Array Data File
# IDs
# Sample latin species name # Normalized data
H3k4me1 KO RAG Mus musculus H3k4me1-KO-RAG.gff
H3k4me2 KO RAG Mus musculus H3k4me2-KO-RAG.gff
H3k4me3 KO RAG Mus musculus H3k4me3-KO-RAG.gff
H3k9 KO RAG Mus musculus H3k9-KO-RAG.gff
H3k27 KO RAG Mus musculus H3k27-KO-RAG.gff
H3k36 KO RAG Mus musculus H3k36-KO-RAG.gff
H3k4me1 KO RAG CD3e Mus musculus H3k4me1-KO-RAG-CD3e.gff
H3k4me2 KO RAG CD3e Mus musculus H3K4me2-KO-RAG-CD3e.gff
H3k4me3 KO RAG CD3e Mus musculus H3k4me3-KO-RAG-CD3e.gff
H3k9 KO RAG CD3e Mus musculus H3k9-KO-RAG-CD3e.gff
H3k27 KO RAG CD3e Mus musculus H3k27-KO-RAG-CD3e.gff
H3k36 KO RAG CD3e Mus musculus H3k36-KO-RAG-CD3e.gff




Affymetrix Expression Data::.

Source Name Characteristics[Organism] Array Design REF Array Data File
# IDs
# Sample latin species name # Affy
# Unprocessed data
Mouse Rag -/- replicate 1 Mus musculus Affymetrix Mouse Gene 1.0 S Mo_KO_Rag_replicate_1.cel
Mouse Rag -/- replicate 2 Mus musculus Affymetrix Mouse Gene 1.0 S Mo_KO_Rag_replicate_2.cel
Mouse Rag -/- replicate 3 Mus musculus Affymetrix Mouse Gene 1.0 S Mo_KO_Rag_replicate_3.cel
Mouse Rag -/- CD3e replicate 1 Mus musculus Affymetrix Mouse Gene 1.0 S Mo_KO_Rag_CD3e_replicate_1.cel
Mouse Rag -/- CD3e replicate 2 Mus musculus Affymetrix Mouse Gene 1.0 S Mo_KO_Rag_CD3e_replicate_2.cel
Mouse Rag -/- CD3e replicate 3 Mus musculus Affymetrix Mouse Gene 1.0 S Mo_KO_Rag_CD3e_replicate_3.cel

AB Solid ChIP-Seq Data::.

Source Name Characteristics[Organism] Array Data File
# IDs
# Sample latin species name # Processed data
PolII N20 Rag (bins:100; elongation: 245) Mus musculus PolII_N20_Rag_bins_100_elongation_245.wig
PolII N20 RagCD3 (bins:100; elongation:245) Mus musculus PolII_N20_RagCD3_bins_100_elongation_245.wig
MNase-H3K4me1 Rag (bin:100; elongation:146) Mus musculus RagK4me1_146.bin_100.wig
MNase-H3K4me3 Rag (bin:100; elongation:146)Mus musculusRagK4me3_146.bin_100.wig
MNase-H3K4me3 RagCD3 (bin:100; elongation:146)Mus musculusRagCD3_ChIP_MNase_H3K4me3_146bp_bin_100.wig
MNase-H3K4me3 RagCD3 (bin:100; elongation:146) Mus musculus RagCD3_ChIP_MNase_H3K4me3_146bp_bin_100.wig